STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMNAPutative lamin-A-like; Belongs to the intermediate filament family. (647 aa)    
Predicted Functional Partners:
ENSSMAP00000011081
Caspase 6, apoptosis-related cysteine peptidase a.
   
 0.890
SMAX5B_000959
Putative lamin-B2; Belongs to the intermediate filament family.
     
0.855
SMAX5B_006723
Putative granzyme B(G-H)-like; Belongs to the peptidase S1 family.
    
 0.851
SMAX5B_013544
Putative lamin; Belongs to the intermediate filament family.
  
  
 
0.844
SMAX5B_007662
Putative emerin.
    
 0.831
ENSSMAP00000016507
annotation not available
    
 0.829
SMAX5B_010432
Uncharacterized protein; Belongs to the peptidase S1 family.
    
 0.829
ENSSMAP00000012506
Lamin B1.
     
0.820
ENSSMAP00000012404
annotation not available
   
 0.812
SMAX5B_004149
Putative barrier-to-autointegration factor isoform 2.
   
 0.812
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.