STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000428145_00114Unannotated protein. (249 aa)    
Predicted Functional Partners:
GCA_000428145_01469
Unannotated protein.
 
 
 0.961
GCA_000428145_02085
Unannotated protein.
 
 
 0.857
GCA_000428145_02231
Unannotated protein.
 
 
 0.722
GCA_000428145_02966
Unannotated protein.
 
 
 0.684
GCA_000428145_02131
Unannotated protein.
  
  
 0.672
GCA_000428145_00115
Unannotated protein.
       0.661
GCA_000428145_01665
Unannotated protein.
  
    0.627
GCA_000428145_02896
Unannotated protein.
  
    0.627
GCA_000428145_00428
Unannotated protein.
  
  
 0.623
GCA_000428145_01244
Unannotated protein.
   
   0.566
Your Current Organism:
Chitinilyticum litopenaei
NCBI taxonomy Id: 529086
Other names: C. litopenaei DSM 21440, Chitinilyticum litopenaei DSM 21440, beta proteobacterium c1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.