STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP11559.1YXWGXW repeat-containing protein. (109 aa)    
Predicted Functional Partners:
SFP46710.1
Phage conserved hypothetical protein BR0599.
   
   0.670
SFP51425.1
Iron complex outermembrane recepter protein.
    
 
 0.619
SFP51744.1
TonB-dependent Receptor Plug Domain.
    
 
 0.619
SFP57493.1
Iron complex outermembrane recepter protein.
    
 
 0.619
SFP11613.1
Autotransporter-associated beta strand repeat-containing protein.
  
 
 0.559
SFP11541.1
Peptidase family M48.
       0.501
SFP09858.1
Cupin domain protein.
  
  
  0.492
SFP64683.1
Predicted nucleic acid-binding protein, contains PIN domain.
  
     0.486
SFP12558.1
Hypothetical protein.
  
 0.475
SFP37903.1
Protein of unknown function.
  
 0.475
Your Current Organism:
Frateuria terrea
NCBI taxonomy Id: 529704
Other names: CGMCC 1.7053, DSM 26515, F. terrea, Frateuria sp. VA24, Frateuria terrea Zhang et al. 2011, NBRC 104236, strain VA24
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.