STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP11814.1Tagatose-6-phosphate ketose/aldose isomerase. (400 aa)    
Predicted Functional Partners:
SFP11777.1
Tagatose 6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.931
SFP11800.1
Sugar or nucleoside kinase, ribokinase family.
 
 
 0.884
SFP11870.1
Transcriptional regulator, DeoR family.
 
    0.845
SFP60084.1
N-acetylglucosamine-6-phosphate deacetylase.
 
 
 0.822
SFP11838.1
Fructose-bisphosphate aldolase, class I.
    
  0.693
SFP11853.1
Amidohydrolase.
 
     0.680
SFP22400.1
Transcriptional regulator, RpiR family.
  
  
  0.659
glmS
Glucosamine--fructose-6-phosphate aminotransferase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
  
 
0.648
cutC
Copper homeostasis protein; Participates in the control of copper homeostasis. Belongs to the CutC family.
 
     0.612
carB
Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.
  
  
  0.593
Your Current Organism:
Frateuria terrea
NCBI taxonomy Id: 529704
Other names: CGMCC 1.7053, DSM 26515, F. terrea, Frateuria sp. VA24, Frateuria terrea Zhang et al. 2011, NBRC 104236, strain VA24
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