Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFP26230.1 | SFP37608.1 | SAMN02927913_1315 | SAMN02927913_1792 | DNA processing protein. | Response regulator receiver domain-containing protein. | 0.650 |
SFP26230.1 | SFP40460.1 | SAMN02927913_1315 | SAMN02927913_1981 | DNA processing protein. | Competence protein ComEC. | 0.899 |
SFP26230.1 | SFP52361.1 | SAMN02927913_1315 | SAMN02927913_2498 | DNA processing protein. | Leader peptidase (prepilin peptidase) / N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.781 |
SFP26230.1 | SFP59458.1 | SAMN02927913_1315 | SAMN02927913_2790 | DNA processing protein. | Magnesium chelatase family protein. | 0.854 |
SFP26230.1 | SFP60425.1 | SAMN02927913_1315 | SAMN02927913_2849 | DNA processing protein. | comF family protein. | 0.944 |
SFP26230.1 | SFP77907.1 | SAMN02927913_1315 | SAMN02927913_3561 | DNA processing protein. | Single-strand DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.675 |
SFP26230.1 | fliP | SAMN02927913_1315 | SAMN02927913_3188 | DNA processing protein. | Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. | 0.614 |
SFP26230.1 | recA | SAMN02927913_1315 | SAMN02927913_0741 | DNA processing protein. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.645 |
SFP26230.1 | recG | SAMN02927913_1315 | SAMN02927913_1038 | DNA processing protein. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.622 |
SFP26230.1 | topA | SAMN02927913_1315 | SAMN02927913_1314 | DNA processing protein. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.838 |
SFP37608.1 | SFP26230.1 | SAMN02927913_1792 | SAMN02927913_1315 | Response regulator receiver domain-containing protein. | DNA processing protein. | 0.650 |
SFP37608.1 | SFP40460.1 | SAMN02927913_1792 | SAMN02927913_1981 | Response regulator receiver domain-containing protein. | Competence protein ComEC. | 0.687 |
SFP37608.1 | SFP59458.1 | SAMN02927913_1792 | SAMN02927913_2790 | Response regulator receiver domain-containing protein. | Magnesium chelatase family protein. | 0.472 |
SFP37608.1 | SFP60425.1 | SAMN02927913_1792 | SAMN02927913_2849 | Response regulator receiver domain-containing protein. | comF family protein. | 0.683 |
SFP37608.1 | fliP | SAMN02927913_1792 | SAMN02927913_3188 | Response regulator receiver domain-containing protein. | Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. | 0.827 |
SFP37608.1 | recA | SAMN02927913_1792 | SAMN02927913_0741 | Response regulator receiver domain-containing protein. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.766 |
SFP37608.1 | topA | SAMN02927913_1792 | SAMN02927913_1314 | Response regulator receiver domain-containing protein. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.436 |
SFP40460.1 | SFP26230.1 | SAMN02927913_1981 | SAMN02927913_1315 | Competence protein ComEC. | DNA processing protein. | 0.899 |
SFP40460.1 | SFP37608.1 | SAMN02927913_1981 | SAMN02927913_1792 | Competence protein ComEC. | Response regulator receiver domain-containing protein. | 0.687 |
SFP40460.1 | SFP52361.1 | SAMN02927913_1981 | SAMN02927913_2498 | Competence protein ComEC. | Leader peptidase (prepilin peptidase) / N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.742 |
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