STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP48829.1Two-component system, OmpR family, KDP operon response regulator KdpE. (230 aa)    
Predicted Functional Partners:
SFP37440.1
Signal transduction histidine kinase.
 
0.998
SFP37646.1
PAS domain S-box-containing protein.
 
 0.998
SFP29202.1
Hypothetical protein.
  
 0.991
SFP37608.1
Response regulator receiver domain-containing protein.
 
0.991
SFP48847.1
Two-component system, OmpR family, sensor histidine kinase KdpD.
 
 0.978
SFP16277.1
PAS domain S-box-containing protein.
 
 0.976
SFP03592.1
Response regulator receiver domain-containing protein.
  
 0.973
SFP64845.1
PAS domain S-box-containing protein.
0.964
SFP27269.1
PAS domain S-box-containing protein.
 0.955
SFP33949.1
PAS domain S-box-containing protein.
 
 0.955
Your Current Organism:
Frateuria terrea
NCBI taxonomy Id: 529704
Other names: CGMCC 1.7053, DSM 26515, F. terrea, Frateuria sp. VA24, Frateuria terrea Zhang et al. 2011, NBRC 104236, strain VA24
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