STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP51089.1Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (283 aa)    
Predicted Functional Partners:
SFP29554.1
LysR family transcriptional regulator, regulator for bpeEF and oprC; Belongs to the LysR transcriptional regulatory family.
  
     0.746
SFP10635.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.723
SFP51608.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.708
SFP72645.1
LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator; Belongs to the LysR transcriptional regulatory family.
  
     0.682
SFP04750.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.630
SFP51099.1
Hypothetical protein.
       0.542
SFP51072.1
NADPH2:quinone reductase.
       0.525
SFP56048.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.508
SFP13651.1
LysR family transcriptional regulator, glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.484
SFP41375.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.467
Your Current Organism:
Frateuria terrea
NCBI taxonomy Id: 529704
Other names: CGMCC 1.7053, DSM 26515, F. terrea, Frateuria sp. VA24, Frateuria terrea Zhang et al. 2011, NBRC 104236, strain VA24
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