Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFP11613.1 | SFP34495.1 | SAMN02927913_0684 | SAMN02927913_1630 | Autotransporter-associated beta strand repeat-containing protein. | 1-acyl-sn-glycerol-3-phosphate acyltransferases. | 0.499 |
SFP11613.1 | SFP40206.1 | SAMN02927913_0684 | SAMN02927913_1968 | Autotransporter-associated beta strand repeat-containing protein. | Type IV secretion system protein VirB2. | 0.721 |
SFP11613.1 | SFP40225.1 | SAMN02927913_0684 | SAMN02927913_1969 | Autotransporter-associated beta strand repeat-containing protein. | Type IV secretion system protein VirB3; Manually curated. | 0.748 |
SFP11613.1 | SFP57905.1 | SAMN02927913_0684 | SAMN02927913_2695 | Autotransporter-associated beta strand repeat-containing protein. | Mg2+-importing ATPase. | 0.497 |
SFP34495.1 | SFP11613.1 | SAMN02927913_1630 | SAMN02927913_0684 | 1-acyl-sn-glycerol-3-phosphate acyltransferases. | Autotransporter-associated beta strand repeat-containing protein. | 0.499 |
SFP34495.1 | SFP57905.1 | SAMN02927913_1630 | SAMN02927913_2695 | 1-acyl-sn-glycerol-3-phosphate acyltransferases. | Mg2+-importing ATPase. | 0.451 |
SFP34495.1 | SFP64354.1 | SAMN02927913_1630 | SAMN02927913_2986 | 1-acyl-sn-glycerol-3-phosphate acyltransferases. | Amino acid adenylation domain-containing protein. | 0.999 |
SFP34495.1 | atpD | SAMN02927913_1630 | SAMN02927913_1289 | 1-acyl-sn-glycerol-3-phosphate acyltransferases. | F-type H+-transporting ATPase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.510 |
SFP34495.1 | atpE | SAMN02927913_1630 | SAMN02927913_1294 | 1-acyl-sn-glycerol-3-phosphate acyltransferases. | F-type H+-transporting ATPase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.687 |
SFP40206.1 | SFP11613.1 | SAMN02927913_1968 | SAMN02927913_0684 | Type IV secretion system protein VirB2. | Autotransporter-associated beta strand repeat-containing protein. | 0.721 |
SFP40206.1 | SFP40225.1 | SAMN02927913_1968 | SAMN02927913_1969 | Type IV secretion system protein VirB2. | Type IV secretion system protein VirB3; Manually curated. | 0.964 |
SFP40206.1 | SFP57905.1 | SAMN02927913_1968 | SAMN02927913_2695 | Type IV secretion system protein VirB2. | Mg2+-importing ATPase. | 0.463 |
SFP40225.1 | SFP11613.1 | SAMN02927913_1969 | SAMN02927913_0684 | Type IV secretion system protein VirB3; Manually curated. | Autotransporter-associated beta strand repeat-containing protein. | 0.748 |
SFP40225.1 | SFP40206.1 | SAMN02927913_1969 | SAMN02927913_1968 | Type IV secretion system protein VirB3; Manually curated. | Type IV secretion system protein VirB2. | 0.964 |
SFP40225.1 | SFP57905.1 | SAMN02927913_1969 | SAMN02927913_2695 | Type IV secretion system protein VirB3; Manually curated. | Mg2+-importing ATPase. | 0.511 |
SFP41449.1 | SFP57905.1 | SAMN02927913_2039 | SAMN02927913_2695 | Sulfite reductase (NADPH) flavoprotein alpha-component; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component. | Mg2+-importing ATPase. | 0.708 |
SFP57889.1 | SFP57905.1 | SAMN02927913_2694 | SAMN02927913_2695 | Hypothetical protein. | Mg2+-importing ATPase. | 0.646 |
SFP57905.1 | SFP11613.1 | SAMN02927913_2695 | SAMN02927913_0684 | Mg2+-importing ATPase. | Autotransporter-associated beta strand repeat-containing protein. | 0.497 |
SFP57905.1 | SFP34495.1 | SAMN02927913_2695 | SAMN02927913_1630 | Mg2+-importing ATPase. | 1-acyl-sn-glycerol-3-phosphate acyltransferases. | 0.451 |
SFP57905.1 | SFP40206.1 | SAMN02927913_2695 | SAMN02927913_1968 | Mg2+-importing ATPase. | Type IV secretion system protein VirB2. | 0.463 |
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