STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP73458.1EamA domain-containing membrane protein RarD. (313 aa)    
Predicted Functional Partners:
SFP73437.1
Putative signal transducing protein.
       0.794
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
  
    0.792
SFP73415.1
Proline 4-hydroxylase (includes Rps23 Pro-64 3,4-dihydroxylase Tpa1), contains SM-20 domain.
       0.645
SFP73349.1
Uncharacterized membrane protein YdjX, TVP38/TMEM64 family, SNARE-associated domain.
 
     0.534
glnS
glutaminyl-tRNA synthetase.
       0.500
SFP73372.1
tRNA(Arg) A34 adenosine deaminase TadA.
       0.499
SFP40670.1
tRNA-binding protein.
  
   0.421
clpB
ATP-dependent Clp protease ATP-binding subunit ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.
       0.413
Your Current Organism:
Frateuria terrea
NCBI taxonomy Id: 529704
Other names: CGMCC 1.7053, DSM 26515, F. terrea, Frateuria sp. VA24, Frateuria terrea Zhang et al. 2011, NBRC 104236, strain VA24
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