Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEH24276.1 | AEH24960.1 | PYCH_05880 | PYCH_12880 | MCM2/3/5 family DNA replication licensing factor; Belongs to the MCM family. | Replication factor A. | 0.904 |
AEH24276.1 | AEH24965.1 | PYCH_05880 | PYCH_12930 | MCM2/3/5 family DNA replication licensing factor; Belongs to the MCM family. | Hef nuclease. | 0.436 |
AEH24276.1 | AEH25222.1 | PYCH_05880 | PYCH_15560 | MCM2/3/5 family DNA replication licensing factor; Belongs to the MCM family. | Family B-type DNA-dependent polymerase precursor. | 0.988 |
AEH24276.1 | pcn | PYCH_05880 | PYCH_10200 | MCM2/3/5 family DNA replication licensing factor; Belongs to the MCM family. | DNA polymerase sliding clamp; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. | 0.981 |
AEH24276.1 | radA | PYCH_05880 | PYCH_17240 | MCM2/3/5 family DNA replication licensing factor; Belongs to the MCM family. | DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules. | 0.958 |
AEH24276.1 | topA | PYCH_05880 | PYCH_04720 | MCM2/3/5 family DNA replication licensing factor; Belongs to the MCM family. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.495 |
AEH24960.1 | AEH24276.1 | PYCH_12880 | PYCH_05880 | Replication factor A. | MCM2/3/5 family DNA replication licensing factor; Belongs to the MCM family. | 0.904 |
AEH24960.1 | AEH24961.1 | PYCH_12880 | PYCH_12890 | Replication factor A. | Hypothetical protein. | 0.858 |
AEH24960.1 | AEH24962.1 | PYCH_12880 | PYCH_12900 | Replication factor A. | Hypothetical protein. | 0.862 |
AEH24960.1 | AEH24965.1 | PYCH_12880 | PYCH_12930 | Replication factor A. | Hef nuclease. | 0.923 |
AEH24960.1 | AEH25195.1 | PYCH_12880 | PYCH_15290 | Replication factor A. | ISA0963-5 transposase. | 0.895 |
AEH24960.1 | AEH25222.1 | PYCH_12880 | PYCH_15560 | Replication factor A. | Family B-type DNA-dependent polymerase precursor. | 0.806 |
AEH24960.1 | mre11 | PYCH_12880 | PYCH_06180 | Replication factor A. | DNA repair exonuclease; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Mre11 binds to DSB ends and has both double-stranded 3'-5' exonuclease activity and single-stranded endonuclease activity. Belongs to the MRE11/RAD32 family. | 0.860 |
AEH24960.1 | pcn | PYCH_12880 | PYCH_10200 | Replication factor A. | DNA polymerase sliding clamp; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. | 0.912 |
AEH24960.1 | radA | PYCH_12880 | PYCH_17240 | Replication factor A. | DNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules. | 0.769 |
AEH24960.1 | topA | PYCH_12880 | PYCH_04720 | Replication factor A. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.869 |
AEH24961.1 | AEH24960.1 | PYCH_12890 | PYCH_12880 | Hypothetical protein. | Replication factor A. | 0.858 |
AEH24961.1 | AEH24962.1 | PYCH_12890 | PYCH_12900 | Hypothetical protein. | Hypothetical protein. | 0.871 |
AEH24962.1 | AEH24960.1 | PYCH_12900 | PYCH_12880 | Hypothetical protein. | Replication factor A. | 0.862 |
AEH24962.1 | AEH24961.1 | PYCH_12900 | PYCH_12890 | Hypothetical protein. | Hypothetical protein. | 0.871 |
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