STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIC47420.1DNA internalization-related competence protein ComEC/Rec2. (734 aa)    
Predicted Functional Partners:
AIC47419.1
DNA uptake protein-related DNA-binding protein.
 
  
 0.952
AIC47421.1
DNA polymerase III, delta subunit.
    
 0.904
AIC47334.1
DNA protecting protein DprA.
 
  
 0.848
AIC47906.1
Putative amidophosphoribosyltransferase.
 
  
 0.804
pheT
phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.787
AIC47792.1
Type IV leader peptidase family.
  
  
 0.715
leuS
leucyl-tRNA synthetase, eubacterial and mitochondrial family; leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.652
recA
Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
  
 0.644
AIC47422.1
Cyanate permease.
  
    0.605
AIC47333.1
Mg chelatase-related protein.
 
  
 0.592
Your Current Organism:
Rhodoluna lacicola
NCBI taxonomy Id: 529884
Other names: Candidatus Rhodoluna lacicola, DSM 23834, LMG 26932, LMG:26932, R. lacicola, Rhodoluna lacicola Hahn et al. 2014, actinobacterium MWH-Ta8, strain MWH-Ta8
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