Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psta_0041PFAM: outer membrane chaperone Skp (OmpH); KEGG: sus:Acid_4790 outer membrane chaperone Skp (OmpH). (201 aa)    
Predicted Functional Partners:
Psta_4092
KEGG: net:Neut_1053 hypothetical protein.
    
 
 0.753
lpxD
UDP-3-O-(3-hydroxymyristoyl) glucosamine N- acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
  
    0.667
Psta_2663
PFAM: surface antigen (D15); KEGG: dps:DP0281 outer membrane protein.
  
  
 0.655
Psta_2664
PFAM: surface antigen variable number repeat protein; KEGG: gbm:Gbem_0839 outer membrane protein assembly complex, YaeT protein.
  
  
 0.646
rpmJ
TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: rpl36; 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
   
    0.541
rpsM
Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
   
    0.540
Psta_0040
PFAM: FG-GAP repeat protein; KEGG: sus:Acid_2424 FG-GAP repeat-containing protein.
       0.528
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
    0.510
Psta_0042
SMART: helicase c2; DEAD-like helicase; KEGG: gme:Gmet_3167 helicase C2.
       0.487
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
    0.478
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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