STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_0053KEGG: sus:Acid_0106 putative anti-sigma regulatory factor, serine/threonine protein kinase. (139 aa)    
Predicted Functional Partners:
Psta_0054
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pca:Pcar_1874 anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.971
Psta_4013
Protein serine phosphatase with GAF(s) sensor(s); PFAM: Stage II sporulation E family protein; GAF domain protein; Forkhead-associated protein; SMART: protein phosphatase 2C domain protein; Forkhead-associated protein; GAF domain protein; KEGG: sus:Acid_3432 serine phosphatase.
 
 
 0.944
Psta_0814
Protein serine phosphatase with GAF(s) sensor(s); PFAM: Stage II sporulation E family protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; GAF domain protein; KEGG: sus:Acid_3432 serine phosphatase.
 
 
 0.923
Psta_3198
Protein serine phosphatase with GAF(s) sensor(s); PFAM: Stage II sporulation E family protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; GAF domain protein; KEGG: scl:sce6543 protein phosphatase 2C domain- containing protein.
 
 
 0.923
Psta_0469
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dvl:Dvul_2983 anti-sigma-factor antagonist.
  
 
 0.886
Psta_3468
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dde:Dde_1719 anti-anti-sigma regulatory factor, SpoIIAA.
  
 
 0.886
Psta_3637
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dal:Dalk_0884 anti-sigma-factor antagonist.
  
 
 0.886
Psta_0819
KEGG: dal:Dalk_3918 multi-sensor hybrid histidine kinase; TIGRFAM: ammonium transporter; PAS sensor protein; PFAM: Rh family protein/ammonium transporter; ATP- binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; response regulator receiver.
  
  
 0.878
Psta_3555
RNA polymerase, sigma 28 subunit, FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.835
Psta_2364
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.778
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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