STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_0082PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: ade:Adeh_3302 FAD dependent oxidoreductase. (549 aa)    
Predicted Functional Partners:
Psta_0880
PFAM: Squalene/phytoene synthase; KEGG: sus:Acid_1266 farnesyl-diphosphate farnesyltransferase.
  
  
 0.713
Psta_0881
TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: sus:Acid_1265 squalene/phytoene synthase.
  
  
 0.713
Psta_2970
PFAM: peptidase M10A and M12B matrixin and adamalysin; SMART: peptidase metallopeptidase; KEGG: similar to matrix metalloproteinase 14.
  
     0.695
Psta_2410
PFAM: Endonuclease/exonuclease/phosphatase; SMART: Deoxyribonuclease I-like; KEGG: predicted protein; K01150 deoxyribonuclease I.
  
     0.516
Psta_0081
PFAM: protein of unknown function DUF6 transmembrane; KEGG: ade:Adeh_1435 hypothetical protein.
       0.460
Psta_1757
PFAM: alpha/beta hydrolase fold; KEGG: mrd:Mrad2831_0619 alpha/beta hydrolase fold.
  
    0.438
Psta_3501
Hypothetical protein; KEGG: mxa:MXAN_4062 leucine-rich repeat domain protein.
  
     0.412
Psta_4654
Sarcosine oxidase; PFAM: FAD dependent oxidoreductase; KEGG: sus:Acid_5898 N-methyltryptophan oxidase.
  
    0.411
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.