Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psta_0106KEGG: dol:Dole_0018 hypothetical protein. (353 aa)    
Predicted Functional Partners:
Psta_0480
PFAM: protein of unknown function DUF107; KEGG: dol:Dole_0019 hypothetical protein.
 
  
 0.928
Psta_0479
PFAM: protein of unknown function DUF107; KEGG: dol:Dole_0020 hypothetical protein.
 
  
 0.924
Psta_0107
KEGG: hypothetical protein.
       0.568
Psta_1346
PFAM: band 7 protein; SMART: band 7 protein; KEGG: dal:Dalk_5076 band 7 protein.
   
  
 0.510
Psta_0105
PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: bcz:BCZK4651 phosphomannomutase.
       0.404
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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