Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Psta_0116Hypothetical protein. (150 aa)    
Predicted Functional Partners:
Psta_3830
PFAM: UvrB/UvrC protein; KEGG: bsu:BSU00840 modulation of CtsR repression.
  
     0.690
mcsB
ATP:guanido phosphotransferase; Catalyzes the specific phosphorylation of arginine residues in proteins; Belongs to the ATP:guanido phosphotransferase family.
  
     0.684
Psta_1526
PFAM: protein of unknown function DUF1559; KEGG: sus:Acid_5705 Tfp pilus assembly protein PilE-like protein.
  
     0.649
Psta_2053
PFAM: protein of unknown function DUF1559; KEGG: sus:Acid_5705 Tfp pilus assembly protein PilE-like protein.
  
     0.605
Psta_1469
Hypothetical protein; KEGG: sus:Acid_5705 Tfp pilus assembly protein PilE-like protein.
  
     0.592
Psta_0115
PFAM: PSP1 domain protein; KEGG: glo:Glov_1948 PSP1 domain protein.
       0.531
Psta_2987
PFAM: protein of unknown function DUF1559; KEGG: sus:Acid_5705 Tfp pilus assembly protein PilE-like protein.
  
     0.526
Psta_2358
PFAM: permease YjgP/YjgQ family protein; KEGG: ppd:Ppro_1639 permease YjgP/YjgQ family protein.
  
     0.521
Psta_3921
PFAM: UTP--glucose-1-phosphate uridylyltransferase; KEGG: hypothetical protein LOC100037187.
  
     0.490
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
       0.485
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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