STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_0118Hypothetical protein; KEGG: tgr:Tgr7_0494 major facilitator transporter. (468 aa)    
Predicted Functional Partners:
Psta_0119
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: saz:Sama_0499 HAD superfamily hydrolase.
       0.697
Psta_3367
SMART: Pyrrolo-quinoline quinone; KEGG: maq:Maqu_1130 pyrrolo-quinoline quinone.
  
     0.618
Psta_4192
PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: rme:Rmet_4377 phospholipid/glycerol acyltransferase.
  
     0.548
Psta_2458
KEGG: smt:Smal_3698 hypothetical protein.
  
     0.536
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
  
  
 0.524
Psta_2494
PFAM: SNARE associated Golgi protein; KEGG: scl:sce5352 hypothetical protein.
 
     0.506
Psta_2206
KEGG: hypothetical protein.
  
     0.500
Psta_0124
KEGG: swp:swp_0420 hypothetical protein.
  
     0.496
Psta_2214
KEGG: sfu:Sfum_4007 hypothetical protein.
  
   
 0.479
Psta_4061
KEGG: saz:Sama_1061 hypothetical protein.
  
 
   0.476
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.