STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_0126Hypothetical protein; KEGG: afw:Anae109_3970 TadE family protein. (144 aa)    
Predicted Functional Partners:
Psta_0127
PFAM: type II secretion system protein; KEGG: bpl:BURPS1106A_A2968 type II secretion system protein.
  
    0.738
Psta_0125
PFAM: TadE family protein; KEGG: sat:SYN_01494 flp pilus assembly protein family protein.
       0.684
Psta_0128
PFAM: type II secretion system protein; KEGG: bte:BTH_II2275 Flp pilus assembly protein TadB.
  
  
 0.650
Psta_0124
KEGG: swp:swp_0420 hypothetical protein.
       0.644
Psta_0130
KEGG: gbm:Gbem_1834 response regulator receiver protein.
  
    0.623
Psta_0129
PFAM: type II secretion system protein E; KEGG: sus:Acid_1412 type II secretion system protein E.
  
    0.607
Psta_1080
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: csa:Csal_1657 Flp pilus assembly CpaB.
  
    0.436
Psta_2075
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: rme:Rmet_0648 Flp pilus assembly CpaB.
  
    0.436
Psta_1191
Response regulator receiver protein; KEGG: pca:Pcar_1751 Flp pilus assembly ATPase CpaE.
  
    0.409
Psta_2077
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ppd:Ppro_2701 response regulator receiver protein.
  
    0.409
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.