Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Psta_0136Hypothetical protein; KEGG: pat:Patl_3492 twin-arginine translocation pathway signal. (824 aa)    
Predicted Functional Partners:
Psta_3224
TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1550; KEGG: ade:Adeh_4265 double-transmembrane region.
 
     0.770
Psta_4287
KEGG: scl:sce7370 hypothetical protein.
  
     0.762
Psta_2467
Hypothetical protein; KEGG: ank:AnaeK_3798 FHA domain containing protein.
  
     0.755
Psta_0478
TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1550; KEGG: acp:A2cp1_4421 hypothetical protein.
 
     0.754
Psta_3225
KEGG: sus:Acid_6438 hypothetical protein.
 
     0.739
Psta_2695
KEGG: sus:Acid_6432 hypothetical protein.
  
     0.738
Psta_1360
KEGG: hypothetical protein.
  
     0.732
Psta_2884
Hypothetical protein; KEGG: proteophosphoglycan 5.
  
     0.732
Psta_2914
TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1550; KEGG: mxa:MXAN_6612 hypothetical protein.
 
     0.725
Psta_2699
TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1550; KEGG: ank:AnaeK_4400 hypothetical protein.
  
     0.723
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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