STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_0138PFAM: WGR domain protein; SMART: WGR domain protein; KEGG: mxa:MXAN_2892 WGR domain protein. (413 aa)    
Predicted Functional Partners:
Psta_0139
KEGG: hypothetical protein.
 
     0.925
Psta_0140
KEGG: rce:RC1_0811 hypothetical protein.
 
     0.912
Psta_0137
KEGG: mxa:MXAN_2890 hypothetical protein.
 
    0.900
Psta_0143
KEGG: mxa:MXAN_2889 radical SAM domain protein.
 
    0.898
Psta_0141
KEGG: mxa:MXAN_2887 hypothetical protein.
 
    0.865
Psta_0142
KEGG: mxa:MXAN_2888 coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
    0.853
Psta_3837
KEGG: mmr:Mmar10_0440 hypothetical protein.
  
     0.632
Psta_2510
KEGG: mxa:MXAN_2319 hypothetical protein.
  
     0.608
Psta_3836
KEGG: mmr:Mmar10_1683 cellulose biosynthetic (CelD)-like protein.
  
     0.602
Psta_0364
PFAM: VWA containing CoxE family protein; KEGG: pna:Pnap_3742 VWA containing CoxE family protein.
  
     0.485
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.