STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_0152Hypothetical protein; KEGG: hch:HCH_00659 alpha/beta fold family hydrolase. (257 aa)    
Predicted Functional Partners:
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.530
Psta_1114
Hypothetical protein.
    
  0.522
Psta_4608
Hypothetical protein.
    
  0.522
Psta_1046
PFAM: phospholipase/Carboxylesterase; KEGG: mfa:Mfla_2130 carboxylesterase.
     
 0.483
Psta_1243
KEGG: rpd:RPD_2989 hypothetical protein.
     
 0.483
Psta_4001
PFAM: phospholipase/Carboxylesterase; KEGG: mxa:MXAN_1175 phospholipase/carboxylesterase family protein.
     
 0.483
Psta_4332
PFAM: phospholipase/Carboxylesterase; KEGG: sus:Acid_1148 putative esterase.
     
 0.483
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.455
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.