STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_0159Cytochrome c peroxidase-like protein; KEGG: sfu:Sfum_1622 40-residue YVTN family beta- propeller repeat protein. (637 aa)    
Predicted Functional Partners:
Psta_0767
Conserved hypothetical protein; KEGG: sfu:Sfum_1622 40-residue YVTN family beta- propeller repeat protein.
 
 
0.932
Psta_0687
Hypothetical protein; KEGG: sfu:Sfum_1622 40-residue YVTN family beta- propeller repeat protein.
 
 
0.926
Psta_0172
KEGG: predicted protein.
 
 
 0.914
Psta_4140
PFAM: WD40 domain protein beta Propeller; KEGG: neu:NE0902 periplasmic component of the Tol biopolymer transport system.
  
 
 0.898
Psta_1109
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_0347 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
  
 0.618
Psta_3849
PFAM: Cytochrome b/b6 domain; KEGG: scl:sce0365 cytochrome b6.
 
  
 0.579
kdsB
3-deoxy-D-manno- octulosonatecytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
       0.574
Psta_0158
TIGRFAM: adenylyl cyclase CyaB; PFAM: adenylate cyclase; KEGG: dvm:DvMF_0460 adenylate cyclase.
 
     0.560
Psta_2934
SMART: PDZ/DHR/GLGF domain protein; KEGG: sus:Acid_4385 hypothetical protein.
 
  
 0.518
Psta_4419
KEGG: mno:Mnod_7207 hypothetical protein.
  
     0.514
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.