Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psta_0183PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_4060 hypothetical protein. (484 aa)    
Predicted Functional Partners:
Psta_0182
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: sus:Acid_4059 hypothetical protein.
 
     0.886
Psta_3493
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: sus:Acid_0858 hypothetical protein.
 
     0.778
Psta_0233
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: sus:Acid_6186 hypothetical protein.
  
     0.775
Psta_0318
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: sus:Acid_6186 hypothetical protein.
  
     0.775
Psta_1655
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_3952 hypothetical protein.
  
     0.775
Psta_2228
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: sus:Acid_0974 hypothetical protein.
  
     0.775
Psta_2234
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; coagulation factor 5/8 type domain protein; SMART: Fucolectin tachylectin-4 pentraxin-1; KEGG: sus:Acid_0974 hypothetical protein.
  
     0.775
Psta_2491
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; PA14 domain protein; SMART: PA14 domain protein; KEGG: sus:Acid_3952 hypothetical protein.
  
     0.775
Psta_2730
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: sus:Acid_1145 hypothetical protein.
  
     0.775
Psta_2733
PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: sus:Acid_6547 hypothetical protein.
  
     0.775
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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