Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Psta_0285Hypothetical protein; KEGG: scl:sce7119 serine protease. (387 aa)    
Predicted Functional Partners:
Psta_0286
PFAM: Peptidase S7 flavivirus helicase (NS3); KEGG: jan:Jann_3581 DNA/RNA non-specific endonuclease.
       0.752
Psta_0283
KEGG: lpc:LPC_1685 hypothetical protein.
       0.642
Psta_0284
KEGG: cja:CJA_3780 hypothetical protein.
       0.642
Psta_0288
KEGG: scl:sce7152 hypothetical protein.
      0.592
Psta_0287
Hypothetical protein.
       0.562
Psta_4461
PFAM: DNA/RNA non-specific endonuclease; peptidase S8 and S53 subtilisin kexin sedolisin; SMART: DNA/RNA non-specific endonuclease; KEGG: jan:Jann_3581 DNA/RNA non-specific endonuclease.
 
     0.561
Psta_1692
PFAM: response regulator receiver; KEGG: bph:Bphy_4167 GAF sensor hybrid histidine kinase.
  
     0.467
Psta_3824
PFAM: AMP-dependent synthetase and ligase; aminotransferase class-III; aminotransferase class I and II; phosphopantetheine-binding; KEGG: mxa:MXAN_4601 non-ribosomal peptide synthase.
  
    0.451
Psta_0366
PFAM: ATPase associated with various cellular activities AAA_5; ATPase associated with various cellular activities AAA_3; KEGG: mch:Mchl_1791 ATPase associated with various cellular activities AAA_5.
  
     0.434
Psta_3063
PFAM: protein of unknown function DUF1552; KEGG: mxa:MXAN_4109 hypothetical protein.
  
     0.421
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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