Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psta_0286PFAM: Peptidase S7 flavivirus helicase (NS3); KEGG: jan:Jann_3581 DNA/RNA non-specific endonuclease. (401 aa)    
Predicted Functional Partners:
Psta_0285
Hypothetical protein; KEGG: scl:sce7119 serine protease.
       0.752
Psta_0283
KEGG: lpc:LPC_1685 hypothetical protein.
       0.625
Psta_0284
KEGG: cja:CJA_3780 hypothetical protein.
       0.625
Psta_4460
PFAM: Endonuclease I; KEGG: mxa:MXAN_2141 putative protease / nuclease, EndA/NucM family.
 
      0.612
Psta_0288
KEGG: scl:sce7152 hypothetical protein.
       0.596
Psta_0287
Hypothetical protein.
       0.578
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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