Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psta_0397PFAM: protein of unknown function DUF1559; KEGG: sus:Acid_5705 Tfp pilus assembly protein PilE-like protein. (339 aa)    
Predicted Functional Partners:
Psta_0396
Hypothetical protein.
       0.773
Psta_0537
Hypothetical protein; KEGG: aav:Aave_3550 Tfp pilus assembly protein PilE.
  
     0.704
Psta_0395
KEGG: IPT/TIG domain containing protein.
 
     0.674
Psta_3610
TIGRFAM: type IV pilus assembly protein PilM; KEGG: mxa:MXAN_5776 type IV pilus biogenesis protein PilM.
  
     0.614
Psta_2560
RNA polymerase, sigma 32 subunit, RpoH; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; KEGG: bha:BH1376 RNA polymerase sigma factor RpoD.
  
     0.542
Psta_3921
PFAM: UTP--glucose-1-phosphate uridylyltransferase; KEGG: hypothetical protein LOC100037187.
  
     0.497
rpmB
TIGRFAM: ribosomal protein L28; KEGG: dde:Dde_2425 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
     0.485
Psta_3204
KEGG: ank:AnaeK_0667 hypothetical protein.
  
     0.445
Psta_2138
PFAM: type II secretion system protein; KEGG: xau:Xaut_2108 type II secretion system protein.
  
    0.443
Psta_2909
PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module; KEGG: slo:Shew_2289 glycosy hydrolase family protein.
  
     0.430
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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