Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psta_0702PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rde:RD1_3876 oxidoreductase, putative. (377 aa)    
Predicted Functional Partners:
Psta_0703
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rde:RD1_3874 hypothetical protein.
 
    0.899
Psta_0700
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: smd:Smed_5868 xylose isomerase domain protein TIM barrel.
 
    0.777
Psta_0704
KEGG: sus:Acid_7816 hypothetical protein.
 
     0.738
Psta_0701
KEGG: scl:sce2933 hypothetical protein.
       0.689
Psta_3179
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_3745 hypothetical protein.
  
     0.664
Psta_2567
KEGG: sus:Acid_1705 signal peptide and transmembrane prediction.
  
     0.622
Psta_3178
PFAM: protein of unknown function DUF1549; alpha-L- rhamnosidase domain protein; KEGG: sus:Acid_3744 hypothetical protein.
  
     0.612
Psta_1928
TIGRFAM: heme-binding protein; PFAM: alpha-L-rhamnosidase domain protein; KEGG: bba:Bd0989 L-sorbosone dehydrogenase.
  
     0.547
Psta_4484
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_6145 oxidoreductase domain- containing protein.
  
     0.481
Psta_0705
KEGG: aha:AHA_0721 hypothetical protein.
 
    0.448
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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