STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_0703PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rde:RD1_3874 hypothetical protein. (342 aa)    
Predicted Functional Partners:
Psta_0702
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rde:RD1_3876 oxidoreductase, putative.
 
    0.915
Psta_0704
KEGG: sus:Acid_7816 hypothetical protein.
 
     0.867
Psta_2567
KEGG: sus:Acid_1705 signal peptide and transmembrane prediction.
  
     0.772
Psta_1928
TIGRFAM: heme-binding protein; PFAM: alpha-L-rhamnosidase domain protein; KEGG: bba:Bd0989 L-sorbosone dehydrogenase.
  
     0.771
Psta_3179
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_3745 hypothetical protein.
  
     0.770
Psta_3475
TIGRFAM: heme-binding protein; KEGG: aba:Acid345_0291 cytochrome c, class I.
  
     0.768
Psta_3178
PFAM: protein of unknown function DUF1549; alpha-L- rhamnosidase domain protein; KEGG: sus:Acid_3744 hypothetical protein.
  
     0.767
Psta_0895
TIGRFAM: membrane-bound dehydrogenase domain protein; KEGG: shm:Shewmr7_2505 L-sorbosone dehydrogenase (SNDH).
 
     0.765
Psta_2350
Esterase; KEGG: scl:sce5734 esterases.
  
     0.765
Psta_3792
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_7742 hypothetical protein.
  
     0.738
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.