STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_0758PFAM: DinB family protein; KEGG: hypothetical protein. (152 aa)    
Predicted Functional Partners:
Psta_3527
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_7533 xylose isomerase domain- containing protein; Belongs to the hyi family.
  
     0.594
Psta_2531
KEGG: sus:Acid_4591 hypothetical protein.
  
   
 0.556
Psta_0599
PFAM: amidohydrolase 2; KEGG: scl:sce2294 putative secreted protein.
  
     0.515
Psta_0686
TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: sus:Acid_3123 putative heme-binding protein.
  
     0.424
Psta_1431
TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: protein of unknown function DUF1037; KEGG: bcm:Bcenmc03_6969 hypothetical protein.
  
     0.413
Psta_2310
TIGRFAM: heme-binding protein; PFAM: PBS lyase HEAT domain protein repeat- containing protein; HEAT domain containing protein; KEGG: scl:sce2660 hypothetical protein.
 
     0.402
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.