| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Psta_0104 | Psta_0760 | Psta_0104 | Psta_0760 | Excinuclease ABC C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | PFAM: UvrD/REP helicase; KEGG: gsu:GSU3411 ATP-dependent DNA helicase PcrA, putative. | 0.650 |
| Psta_0104 | Psta_1042 | Psta_0104 | Psta_1042 | Excinuclease ABC C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.471 |
| Psta_0104 | Psta_2313 | Psta_0104 | Psta_2313 | Excinuclease ABC C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | KEGG: gur:Gura_2507 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein. | 0.492 |
| Psta_0104 | Psta_4555 | Psta_0104 | Psta_4555 | Excinuclease ABC C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | PFAM: UvrD/REP helicase; KEGG: pca:Pcar_2961 ATP-dependent DNA helicase. | 0.651 |
| Psta_0104 | polA | Psta_0104 | Psta_3785 | Excinuclease ABC C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.478 |
| Psta_0760 | Psta_0104 | Psta_0760 | Psta_0104 | PFAM: UvrD/REP helicase; KEGG: gsu:GSU3411 ATP-dependent DNA helicase PcrA, putative. | Excinuclease ABC C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.650 |
| Psta_0760 | Psta_1042 | Psta_0760 | Psta_1042 | PFAM: UvrD/REP helicase; KEGG: gsu:GSU3411 ATP-dependent DNA helicase PcrA, putative. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.676 |
| Psta_0760 | Psta_2269 | Psta_0760 | Psta_2269 | PFAM: UvrD/REP helicase; KEGG: gsu:GSU3411 ATP-dependent DNA helicase PcrA, putative. | PFAM: UvrD/REP helicase; KEGG: hac:Hac_0287 ATP-dependent nuclease subunit A; Belongs to the helicase family. UvrD subfamily. | 0.632 |
| Psta_0760 | Psta_2313 | Psta_0760 | Psta_2313 | PFAM: UvrD/REP helicase; KEGG: gsu:GSU3411 ATP-dependent DNA helicase PcrA, putative. | KEGG: gur:Gura_2507 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein. | 0.650 |
| Psta_0760 | Psta_2965 | Psta_0760 | Psta_2965 | PFAM: UvrD/REP helicase; KEGG: gsu:GSU3411 ATP-dependent DNA helicase PcrA, putative. | KEGG: mxa:MXAN_1950 ATP-dependent DNA helicase, RecQ family; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein. | 0.762 |
| Psta_0760 | Psta_4555 | Psta_0760 | Psta_4555 | PFAM: UvrD/REP helicase; KEGG: gsu:GSU3411 ATP-dependent DNA helicase PcrA, putative. | PFAM: UvrD/REP helicase; KEGG: pca:Pcar_2961 ATP-dependent DNA helicase. | 0.913 |
| Psta_0760 | ligA | Psta_0760 | Psta_2044 | PFAM: UvrD/REP helicase; KEGG: gsu:GSU3411 ATP-dependent DNA helicase PcrA, putative. | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. | 0.639 |
| Psta_0760 | polA | Psta_0760 | Psta_3785 | PFAM: UvrD/REP helicase; KEGG: gsu:GSU3411 ATP-dependent DNA helicase PcrA, putative. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.638 |
| Psta_0760 | recA | Psta_0760 | Psta_3796 | PFAM: UvrD/REP helicase; KEGG: gsu:GSU3411 ATP-dependent DNA helicase PcrA, putative. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.759 |
| Psta_0760 | topA | Psta_0760 | Psta_3535 | PFAM: UvrD/REP helicase; KEGG: gsu:GSU3411 ATP-dependent DNA helicase PcrA, putative. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.744 |
| Psta_1042 | Psta_0104 | Psta_1042 | Psta_0104 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Excinuclease ABC C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.471 |
| Psta_1042 | Psta_0760 | Psta_1042 | Psta_0760 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: UvrD/REP helicase; KEGG: gsu:GSU3411 ATP-dependent DNA helicase PcrA, putative. | 0.676 |
| Psta_1042 | Psta_2313 | Psta_1042 | Psta_2313 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: gur:Gura_2507 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein. | 0.990 |
| Psta_1042 | Psta_2965 | Psta_1042 | Psta_2965 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: mxa:MXAN_1950 ATP-dependent DNA helicase, RecQ family; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein. | 0.806 |
| Psta_1042 | Psta_4555 | Psta_1042 | Psta_4555 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: UvrD/REP helicase; KEGG: pca:Pcar_2961 ATP-dependent DNA helicase. | 0.651 |