STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_0784PFAM: protein of unknown function DUF1579; KEGG: nmu:Nmul_A1367 hypothetical protein. (187 aa)    
Predicted Functional Partners:
Psta_0783
PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: pla:Plav_3503 3-demethylubiquinone-9 3- methyltransferase.
       0.562
Psta_3451
PFAM: Spore coat protein CotH; KEGG: xau:Xaut_4634 hypothetical protein.
  
     0.489
Psta_1833
PFAM: protein of unknown function DUF796; KEGG: hypothetical protein; K06887.
  
     0.466
Psta_2270
ATP-dependent nuclease subunit B-like protein; KEGG: rpi:Rpic_1033 hypothetical protein.
  
     0.466
Psta_2280
TIGRFAM: autotransporter-associated beta strand repeat protein; PFAM: Planctomycete extracellular domain protein; Hemolysin-type calcium-binding region; KEGG: azc:AZC_1915 hypothetical protein.
  
     0.414
Psta_0785
PFAM: 3-demethylubiquinone-9 3-methyltransferase; Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sde:Sde_0694 hypothetical protein.
       0.410
Psta_2269
PFAM: UvrD/REP helicase; KEGG: hac:Hac_0287 ATP-dependent nuclease subunit A; Belongs to the helicase family. UvrD subfamily.
  
     0.400
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.