STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_0785PFAM: 3-demethylubiquinone-9 3-methyltransferase; Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sde:Sde_0694 hypothetical protein. (146 aa)    
Predicted Functional Partners:
Psta_4585
PFAM: YCII-related; KEGG: bpy:Bphyt_4212 DGPFAETKE family protein.
    0.926
Psta_0783
PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: pla:Plav_3503 3-demethylubiquinone-9 3- methyltransferase.
 
  
 0.852
Psta_0786
PFAM: YCII-related; KEGG: aba:Acid345_4454 DGPFAETKE domain protein.
    0.760
Psta_0784
PFAM: protein of unknown function DUF1579; KEGG: nmu:Nmul_A1367 hypothetical protein.
       0.410
Psta_1612
PFAM: NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone); KEGG: tmz:Tmz1t_0652 NADPH-dependent FMN reductase.
  
     0.405
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.