Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psta_0809PFAM: short-chain dehydrogenase/reductase SDR; Male sterility domain; KEGG: scl:sce5369 putative retinol dehydrogenase. (296 aa)    
Predicted Functional Partners:
Psta_3824
PFAM: AMP-dependent synthetase and ligase; aminotransferase class-III; aminotransferase class I and II; phosphopantetheine-binding; KEGG: mxa:MXAN_4601 non-ribosomal peptide synthase.
  
 
 0.850
Psta_0810
PFAM: ADP-ribosylation/Crystallin J1; KEGG: similar to ecto ADP-ribosylhydrolase; K05521 ADP-ribosylglycohydrolase.
       0.651
Psta_0811
Hypothetical protein.
       0.647
Psta_1757
PFAM: alpha/beta hydrolase fold; KEGG: mrd:Mrad2831_0619 alpha/beta hydrolase fold.
  
  0.556
Psta_1892
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: ecq:ECED1_2804 fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.532
Psta_0812
Hypothetical protein.
       0.488
Psta_0510
PFAM: flavin-containing monooxygenase FMO; FAD- dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bmj:BMULJ_01290 flavin-binding family monooxygenase.
  
   0.443
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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