Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Psta_0855PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_6142 hypothetical protein. (234 aa)    
Predicted Functional Partners:
Psta_2463
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_0701 hypothetical protein.
 
    
0.925
Psta_2568
KEGG: sus:Acid_5538 hypothetical protein.
 
     0.895
Psta_2312
PFAM: protein of unknown function DUF1080; KEGG: ccs:CCNA_01698 cycloisomaltooligosaccharide glucanotransferase precursor.
  
     0.773
Psta_1926
PFAM: oxidoreductase domain protein; KEGG: aba:Acid345_4311 dehydrogenases related protein.
  
     0.771
Psta_2425
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_2605 hypothetical protein.
  
     0.770
Psta_4312
PFAM: protein of unknown function DUF1080; KEGG: pat:Patl_2684 hypothetical protein.
  
     0.769
Psta_4293
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_6296 oxidoreductase domain- containing protein.
  
     0.767
Psta_0374
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_2979 hypothetical protein.
  
     0.766
Psta_3759
PFAM: protein of unknown function DUF1080; KEGG: sml:Smlt1191 hypothetical protein.
  
     0.766
Psta_4579
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_4818 oxidoreductase domain- containing protein.
  
     0.764
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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