Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psta_0895TIGRFAM: membrane-bound dehydrogenase domain protein; KEGG: shm:Shewmr7_2505 L-sorbosone dehydrogenase (SNDH). (887 aa)    
Predicted Functional Partners:
Psta_2567
KEGG: sus:Acid_1705 signal peptide and transmembrane prediction.
     0.976
Psta_0896
TIGRFAM: heme-binding protein; KEGG: sus:Acid_3123 putative heme-binding protein.
     0.889
Psta_2955
TIGRFAM: heme-binding protein; KEGG: sus:Acid_3123 putative heme-binding protein.
 
     0.781
Psta_1928
TIGRFAM: heme-binding protein; PFAM: alpha-L-rhamnosidase domain protein; KEGG: bba:Bd0989 L-sorbosone dehydrogenase.
  
     0.775
Psta_3475
TIGRFAM: heme-binding protein; KEGG: aba:Acid345_0291 cytochrome c, class I.
  
     0.775
Psta_3677
TIGRFAM: heme-binding protein; PFAM: alpha-L-rhamnosidase domain protein; KEGG: aav:Aave_4522 glucose sorbosone dehydrogenase.
  
     0.768
Psta_0703
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rde:RD1_3874 hypothetical protein.
  
     0.765
Psta_3882
Hypothetical protein; KEGG: rme:Rmet_0747 putative membrane-bound dehydrogenase oxidoreductase protein.
  
     0.761
Psta_2350
Esterase; KEGG: scl:sce5734 esterases.
  
     0.750
Psta_3178
PFAM: protein of unknown function DUF1549; alpha-L- rhamnosidase domain protein; KEGG: sus:Acid_3744 hypothetical protein.
  
     0.718
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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