Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psta_0968Hypothetical protein; KEGG: tetratricopeptide TPR_2 repeat protein precursor. (364 aa)    
Predicted Functional Partners:
Psta_0969
Hypothetical protein; KEGG: mxa:MXAN_0776 von Willebrand factor type A domain protein.
       0.768
Psta_0967
PFAM: MotA/TolQ/ExbB proton channel; KEGG: afw:Anae109_0873 MotA/TolQ/ExbB proton channel.
  
    0.614
Psta_0965
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: asa:ASA_4320 biopolymer transport protein.
  
    0.604
Psta_0966
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: psa:PST_2637 biopolymer transport protein ExbD/TolR family.
  
    0.604
Psta_0964
KEGG: SNF2 superfamily protein.
       0.598
Psta_0970
Hypothetical protein; KEGG: GF17870 gene product from transcript GF17870- RA.
       0.443
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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