STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_1007PFAM: protein of unknown function DUF214; KEGG: bid:Bind_2114 hypothetical protein. (379 aa)    
Predicted Functional Partners:
Psta_1006
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eli:ELI_11040 ABC transporter, ATP-binding protein.
 
   0.951
Psta_1005
PFAM: secretion protein HlyD family protein; KEGG: met:M446_0165 secretion protein HlyD family protein.
 
     0.871
Psta_3091
KEGG: sde:Sde_2784 heterocyst specific ABC- transporter, ATP-binding subunit DevA-like; TIGRFAM: ABC exporter ATP-binding subunit, DevA family; PFAM: ABC transporter related; SMART: AAA ATPase.
  
   0.646
Psta_3703
TIGRFAM: YD repeat protein; PFAM: cellulosome protein dockerin type I; YD repeat-containing protein; KEGG: dal:Dalk_2288 YD repeat protein.
  
    0.597
Psta_4014
TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: acr:Acry_3027 heavy metal translocating P- type ATPase.
  
     0.499
Psta_3006
Hypothetical protein.
   
 
 0.489
Psta_0666
PFAM: metallophosphoesterase; KEGG: hypothetical protein.
  
     0.479
Psta_4491
PFAM: protein of unknown function DUF1597; KEGG: noc:Noc_2005 hypothetical protein.
  
     0.459
Psta_0475
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mca:MCA1400 ABC transporter, ATP-binding protein.
   
   0.454
lolD
ABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
   
   0.454
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.