STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_1037PFAM: fatty acid hydroxylase; KEGG: eli:ELI_10990 sterol desaturase,-like protein. (272 aa)    
Predicted Functional Partners:
Psta_0880
PFAM: Squalene/phytoene synthase; KEGG: sus:Acid_1266 farnesyl-diphosphate farnesyltransferase.
  
 
 0.876
Psta_0881
TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: sus:Acid_1265 squalene/phytoene synthase.
  
 
 0.876
Psta_1577
PFAM: SNARE associated Golgi protein; KEGG: dal:Dalk_3002 SNARE associated Golgi protein.
 
     0.765
Psta_1492
KEGG: hypothetical protein.
   
 
 0.684
Psta_3597
PFAM: glycosyl transferase family 2; KEGG: dol:Dole_1612 glycosyl transferase family protein.
  
 
   0.667
Psta_4395
KEGG: gsu:GSU0485 hypothetical protein.
 
     0.629
Psta_2998
PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); KEGG: tgr:Tgr7_2968 nuclease (SNase domain protein).
   
    0.596
Psta_0790
PFAM: cytochrome P450; KEGG: mex:Mext_0777 cytochrome P450.
  
 
 0.552
queC
exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.
       0.548
Psta_1039
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mgm:Mmc1_3063 aminotransferase, class V.
       0.515
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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