STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_1061KEGG: eca:ECA3411 hypothetical protein. (75 aa)    
Predicted Functional Partners:
Psta_1062
Hypothetical protein.
       0.498
Psta_0948
PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: jan:Jann_1262 hypothetical protein.
   
    0.495
Psta_0949
KEGG: jan:Jann_1263 hypothetical protein.
   
    0.495
Psta_1804
PFAM: protein of unknown function DUF877; KEGG: hch:HCH_00935 hypothetical protein.
  
  
 0.452
Psta_1248
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: ppd:Ppro_3226 ATPase, P-type (transporting), HAD superfamily, subfamily IC.
   
    0.449
Psta_1834
PFAM: virulence protein SciE type; KEGG: azo:azo3899 putative cytoplasmic protein,SciE.
  
    0.430
Psta_2899
Transcriptional regulator; KEGG: Os06g0472400; hypothetical protein.
   
    0.429
Psta_2898
PFAM: protein of unknown function UPF0261; KEGG: mes:Meso_3719 hypothetical protein.
   
    0.426
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.