Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psta_1081PFAM: TadE family protein; KEGG: mex:Mext_0138 TadE family protein. (163 aa)    
Predicted Functional Partners:
Psta_1082
PFAM: peptidase A24A prepilin type IV; KEGG: dps:DP1537 hypothetical protein.
  
    0.741
Psta_1080
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: csa:Csal_1657 Flp pilus assembly CpaB.
  
    0.719
Psta_1077
PFAM: type II secretion system protein; KEGG: rpi:Rpic_0587 type II secretion system protein.
  
    0.504
Psta_1078
PFAM: type II secretion system protein E; KEGG: gbm:Gbem_1055 type II secretion system protein E.
  
    0.479
Psta_1076
PFAM: type II secretion system protein; KEGG: sus:Acid_1414 type II secretion system protein.
  
    0.444
Psta_1079
Hypothetical protein.
       0.425
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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