STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_1109PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_0347 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein. (718 aa)    
Predicted Functional Partners:
Psta_4086
PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide- binding region; KEGG: scl:sce8491 nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
   
 
 0.918
Psta_0739
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: scl:sce4224 NADH dehydrogenase (ubiquinone).
   
 
 0.897
Psta_1111
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
  
 0.894
Psta_3616
KEGG: cja:CJA_1404 oxidoreductase alpha (molybdopterin) subunit; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.880
Psta_0865
KEGG: mxa:MXAN_3539 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
  
 
 0.850
Psta_1618
Hypothetical protein; KEGG: scl:sce2260 putative secreted protein.
  
 
 0.850
Psta_3017
KEGG: sus:Acid_4005 hypothetical protein.
  
 
 0.850
Psta_0864
TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; KEGG: scl:sce8307 succinate dehydrogenase.
   
  
 0.808
Psta_1110
PFAM: FMN-binding domain protein; KEGG: eca:ECA2794 hypothetical protein.
       0.799
Psta_4087
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: scl:sce8492 putative anaerobic reductase component.
  
  
 0.796
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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