Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psta_1174PFAM: Protein of unknown function DUF1592; Protein of unknown function DUF1588; Protein of unknown function DUF1587; Protein of unknown function DUF1595; protein of unknown function DUF1585; KEGG: cja:CJA_1054 hypothetical protein. (874 aa)    
Predicted Functional Partners:
Psta_1175
PFAM: protein of unknown function DUF1552; KEGG: sus:Acid_0842 hypothetical protein.
 
     0.946
Psta_3849
PFAM: Cytochrome b/b6 domain; KEGG: scl:sce0365 cytochrome b6.
  
 
 0.875
Psta_0065
PFAM: protein of unknown function DUF1552; KEGG: sus:Acid_0842 hypothetical protein.
  
     0.775
Psta_0305
PFAM: protein of unknown function DUF1552; KEGG: mxa:MXAN_4109 hypothetical protein.
  
     0.775
Psta_0745
PFAM: protein of unknown function DUF1552; KEGG: sus:Acid_2098 hypothetical protein.
  
     0.775
Psta_1488
PFAM: protein of unknown function DUF1552; KEGG: sus:Acid_4306 hypothetical protein.
  
     0.775
Psta_2830
PFAM: protein of unknown function DUF1552; KEGG: sus:Acid_4306 hypothetical protein.
  
     0.775
Psta_3460
PFAM: protein of unknown function DUF1552; KEGG: sus:Acid_4306 hypothetical protein.
  
     0.775
Psta_3499
PFAM: protein of unknown function DUF1552; KEGG: sus:Acid_0842 hypothetical protein.
  
     0.775
Psta_0309
PFAM: protein of unknown function DUF1552; KEGG: mxa:MXAN_4109 hypothetical protein.
  
     0.774
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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