STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_1194PFAM: TadE family protein; KEGG: pol:Bpro_2553 TadE-like. (336 aa)    
Predicted Functional Partners:
Psta_1195
PFAM: peptidase A24A prepilin type IV; KEGG: sus:Acid_4162 peptidase A24A, prepilin type IV.
  
  
 0.789
Psta_1191
Response regulator receiver protein; KEGG: pca:Pcar_1751 Flp pilus assembly ATPase CpaE.
  
    0.709
Psta_1193
Hypothetical protein; KEGG: pla:Plav_0069 SAF domain-containing protein.
  
    0.707
Psta_1189
PFAM: type II secretion system protein; KEGG: bpy:Bphyt_6877 type II secretion system protein.
  
  
 0.658
Psta_1188
PFAM: type II secretion system protein; KEGG: afw:Anae109_3964 type II secretion system protein.
  
    0.634
Psta_1190
PFAM: type II secretion system protein E; KEGG: ppd:Ppro_2700 type II secretion system protein E.
  
    0.626
Psta_1192
KEGG: dvu:DVU3344 hypothetical protein.
       0.554
Psta_1187
PFAM: protein of unknown function DUF192; KEGG: bba:Bd0471 putative secreted protein.
       0.500
Psta_1196
PFAM: Protein of unknown function DUF361.
       0.476
Psta_1080
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: csa:Csal_1657 Flp pilus assembly CpaB.
  
    0.436
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.