STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_1220TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sus:Acid_4561 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (454 aa)    
Predicted Functional Partners:
Psta_1221
PFAM: acriflavin resistance protein; KEGG: sus:Acid_5518 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     0.975
Psta_1222
PFAM: outer membrane efflux protein; KEGG: acp:A2cp1_2479 outer membrane efflux protein.
 
   0.818
Psta_1276
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sfu:Sfum_3921 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.558
Psta_1274
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sfu:Sfum_3923 outer membrane efflux protein.
   0.553
Psta_2756
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mfa:Mfla_2223 ABC transporter related.
  
 
 0.524
Psta_1005
PFAM: secretion protein HlyD family protein; KEGG: met:M446_0165 secretion protein HlyD family protein.
  
     0.518
Psta_1224
PFAM: outer membrane efflux protein; KEGG: noc:Noc_1541 outer membrane efflux protein.
  
   0.509
Psta_1275
TIGRFAM: transporter, hydrophobe/amphiphile efflux- 1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: sfu:Sfum_3922 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.500
Psta_3092
TIGRFAM: DevC protein; PFAM: protein of unknown function DUF214; KEGG: sde:Sde_2783 ABC transporter, membrane spanning subunit, DevC-like.
 
  
 0.494
Psta_2288
TIGRFAM: transporter, hydrophobe/amphiphile efflux- 1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: mca:MCA1597 multidrug efflux transporter MexF; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.490
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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