STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_1237PFAM: major facilitator superfamily MFS_1; KEGG: sus:Acid_0191 major facilitator transporter. (443 aa)    
Predicted Functional Partners:
Psta_1238
PFAM: Kelch repeat-containing protein; KEGG: set:SEN0991 exported protein.
     0.967
Psta_1239
PFAM: N-acylglucosamine 2-epimerase; KEGG: renin binding protein; K01787 N- acylglucosamine 2-epimerase.
 
     0.860
Psta_1499
KEGG: dal:Dalk_2293 extracellular solute-binding protein family 1.
  
  
 0.799
Psta_4638
Exo-alpha-sialidase; KEGG: sus:Acid_0193 exo-alpha-sialidase.
 
     0.700
Psta_3336
PFAM: dihydrodipicolinate synthetase; KEGG: yen:YE1188 N-acetylneuraminate lyase; Belongs to the DapA family.
 
  
 0.665
Psta_1492
KEGG: hypothetical protein.
 
   
 0.602
Psta_3155
PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: swi:Swit_1885 major facilitator transporter.
  
  
 0.535
Psta_4234
KEGG: sus:Acid_6537 hypothetical protein.
  
    0.525
Psta_3330
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: mxa:MXAN_5271 transcriptional regulator, LuxR family.
  
   
 0.524
Psta_1240
PFAM: protein of unknown function DUF1624; KEGG: rso:RSc2728 hypothetical protein.
 
     0.493
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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