STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_1288PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bra:BRADO0445 putative oxidoreductase/dehydrogenase protein. (398 aa)    
Predicted Functional Partners:
Psta_1535
PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; KEGG: vei:Veis_3268 xylose isomerase domain protein TIM barrel.
 
    0.785
Psta_2481
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_7066 oxidoreductase domain- containing protein.
  
     0.725
Psta_2300
PFAM: oxidoreductase domain protein; KEGG: ypi:YpsIP31758_2173 oxidoreductase, NAD- binding.
  
     0.718
Psta_4293
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_6296 oxidoreductase domain- containing protein.
  
     0.623
Psta_0975
KEGG: nar:Saro_3164 glucose-methanol-choline oxidoreductase.
 
    0.567
Psta_2420
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_4454 oxidoreductase domain- containing protein.
  
     0.555
Psta_1287
Hypothetical protein.
       0.458
Psta_3890
PFAM: oxidoreductase domain protein; KEGG: ypk:y0251 oxidoreductase.
  
     0.449
Psta_4484
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_6145 oxidoreductase domain- containing protein.
  
     0.434
Psta_0068
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: jan:Jann_1462 xylose isomerase-like.
  
    0.426
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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