Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psta_1353PFAM: Phytanoyl-CoA dioxygenase; KEGG: rso:RSc0983 hypothetical protein. (223 aa)    
Predicted Functional Partners:
Psta_1352
Hypothetical protein.
       0.634
Psta_4308
KEGG: met:M446_2019 hypothetical protein.
  
     0.594
Psta_0648
PFAM: protein of unknown function DUF1105; KEGG: mxa:MXAN_6657 hypothetical protein.
  
     0.557
Psta_2303
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: xca:xccb100_0092 hypothetical protein.
  
     0.475
Psta_1350
Hypothetical protein; KEGG: similar to Golgi autoantigen, golgin subfamily a, 3.
       0.465
Psta_1351
Hypothetical protein.
       0.465
Psta_2569
KEGG: mxa:MXAN_2622 hypothetical protein.
  
     0.447
Psta_1354
PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: gme:Gmet_1167 ubiquinone/menaquinone biosynthesis methyltransferase.
       0.418
Psta_0900
PFAM: protein of unknown function DUF95 transmembrane; KEGG: scl:sce1392 hypothetical protein.
  
     0.407
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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