STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_1439PFAM: FAD dependent oxidoreductase; amine oxidase; KEGG: psp:PSPPH_0963 hypothetical protein. (465 aa)    
Predicted Functional Partners:
Psta_1440
PFAM: polysaccharide deacetylase; KEGG: scl:sce3134 putative polysaccharide deacetylase family protein.
 
     0.946
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
  
 0.862
Psta_1438
KEGG: lip:LIC094 WblC protein.
 
     0.811
Psta_1441
KEGG: ppg:PputGB1_1391 UDP-N-acetylglucosamine 2- epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
    0.797
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
  
 0.727
Psta_1435
PFAM: glycosyl transferase family 2; KEGG: rpc:RPC_1645 dolichyl-phosphate beta-D- mannosyltransferase.
 
     0.700
Psta_1437
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bha:BH1248 NADH-dependent dyhydrogenase.
 
     0.675
Psta_1436
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mes:Meso_3973 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
       0.612
Psta_2359
KEGG: gsu:GSU0124 competence protein F, putative.
  
    0.607
Psta_1445
PFAM: polysaccharide biosynthesis protein; KEGG: nwi:Nwi_2754 polysaccharide biosynthesis protein.
  
    0.461
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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