Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psta_1504PFAM: phosphate-selective porin O and P; KEGG: nmu:Nmul_A2678 phosphate-selective porin O and P. (555 aa)    
Predicted Functional Partners:
Psta_4491
PFAM: protein of unknown function DUF1597; KEGG: noc:Noc_2005 hypothetical protein.
  
     0.598
Psta_3302
PFAM: protein of unknown function DUF1597; KEGG: noc:Noc_2005 hypothetical protein.
  
     0.569
Psta_3667
Hypothetical protein; KEGG: gme:Gmet_3371 general secretion pathway protein K.
  
     0.494
Psta_1503
Hypothetical protein.
  
    0.446
Psta_2041
PFAM: type II and III secretion system protein; KEGG: swp:swp_2065 type II and III secretion system protein:NolW-like protein; Belongs to the bacterial secretin family.
  
     0.431
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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