STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psta_1617Formylmethanofuran dehydrogenase subunit B-like protein; KEGG: noc:Noc_0025 formylmethanofuran dehydrogenase. (464 aa)    
Predicted Functional Partners:
Psta_0063
TIGRFAM: formylmethanofuran dehydrogenase subunit A; PFAM: Amidohydrolase 3; KEGG: noc:Noc_0024 DNA/RNA non-specific endonuclease.
 
 0.998
Psta_0060
KEGG: bph:Bphy_6507 formylmethanofuran dehydrogenase subunit C; TIGRFAM: formylmethanofuran dehydrogenase subunit C; PFAM: glutamate synthase alpha subunit domain protein.
 
 
 0.997
ffsA
Formylmethanofuran/tetrahydromethanopterin N-formyltransferase; Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family.
 
 
 0.997
Psta_0199
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: rma:Rmag_1018 glutamate synthase (ferredoxin).
  
 
 0.926
Psta_4087
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: scl:sce8492 putative anaerobic reductase component.
     
  0.900
mch
Methenyltetrahydromethanopterin cyclohydrolase; Catalyzes the hydrolysis of methenyl-H(4)MPT(+) to 5-formyl- H(4)MPT; Belongs to the MCH family.
 
   
 0.823
Psta_2471
PFAM: protein of unknown function DUF201; KEGG: xau:Xaut_3534 hypothetical protein.
 
     0.797
Psta_4265
PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: mno:Mnod_6006 triphosphoribosyl-dephospho-CoA protein.
 
     0.797
Psta_1672
PFAM: histidine biosynthesis protein; KEGG: lch:Lcho_3137 histidine biosynthesis protein; Belongs to the HisA/HisF family.
 
     0.796
Psta_3306
KEGG: bph:Bphy_5939 hypothetical protein.
 
     0.796
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.